2025

Multiple sequence alignment with Kalign 2025/06/01

Map long reads with minimap2 2025/03/29

Demultiplex long reads FASTQ files 2025/03/29

Concatenate files 2025/03/28

2024

Gene ID conversion between Kronos and CS 2024/07/26

Find wheat potential homeologs 2024/07/23

Extract cDNA sequences 2024/07/21

2023

Short read de novo assembly with Velevet 2023/11/03

2022

CRISPR editing check with BWA and SAMTOOLS v2 2022/05/30

CRISPR NGS editing check with HISAT2 2022/05/01

Make bam files with strobeAlign 2022/04/11

Shade sequence alignments with nimBoxshade 2022/03/25

Shade sequence alignments with Boxshade 2022/03/14

2021

Design KASP primers with Primer3 v2.5.0 2021/12/31

Convert a vcf file to SNP table 2021/06/08

Call variants with exactSNP 2021/03/10

Index bams with SAMTOOLS 2021/03/09

Format FASTA to fixed length 2021/03/07

Make bams and indel calls with Subread 2021/03/06

Filter multiple fastq files with FASTP 2021/02/07

Filter fastq files with FASTP 2021/02/07

Make bam files with BWA and SAMTOOLS 2021/02/03

2020

CRISPR Editing Analysis v2 2020/11/15

Demultiplex a Fastq File 2020/11/09

CRISPR Editing Analysis 2020/11/07

2019

Call SNPs from multiple sequence alignment 2019/03/21

2018

Reverse complement of DNA sequences 2018/04/15