I only know RTF, ps, eps and html formats. For the others, you need to add file extension to the output file name.
add ruler to the alignment?
add sequence position number?
create consensus line?
input is aligned DNA sequences?
the fraction of sequences that must agree for a consensus (0-1)
Boxshade supports input files with formats:
And write shaded alignment to:
An edited version of Boxshade v3.3 source can be found here: