Call variants with exactSNP

This tool is for calling SNPs and small indels from bam files with subread tool exactSNP. All the operations are within your memory.

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No spaces are allowed in input file names!

I. Load the reference (a fasta file)

II. Load bam files

III. Call variants

One vcf file will be created for each bam. A summary tab-delimited text file merging all vcf files will be created too.


This tool is a WebAssembly implementation of Subread exactSNP. It runs commands like this:

exactSNP -b -i mapping_results.bam -g mm10.fa -o calledSNPs.vcf

Visit the GitHub page for more details: